genome.fa.s17273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017273.1 Corchorus olitorius cultivar O-4 contig17306, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73441

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6374--6401	14	2.0	14	100	0	56	50	7	14	28	1.69
7171--7217	21	2.2	21	84	0	58	6	27	55	10	1.58
10477--10506	15	1.9	16	93	6	53	70	6	6	16	1.31
12691--12788	35	3.0	34	81	8	105	35	13	17	33	1.88
12877--13018	58	2.4	58	78	3	151	45	4	21	28	1.72
12864--13005	59	2.4	59	80	3	153	42	5	21	30	1.76
15703--15759	11	5.2	11	79	14	64	54	15	8	21	1.68
25530--25572	22	1.9	23	95	4	79	37	13	23	25	1.92
30568--30610	22	1.9	23	95	4	79	37	13	23	25	1.92
30572--30622	21	2.3	22	83	6	59	41	15	19	23	1.90
35863--35910	25	1.9	25	100	0	96	18	18	25	37	1.94
38920--38945	10	2.6	10	100	0	52	38	23	7	30	1.83
39871--39916	12	3.8	12	82	2	56	23	23	13	39	1.90
40746--41079	41	7.9	43	84	6	441	41	26	11	20	1.86
40746--41077	84	3.9	84	93	1	558	41	25	11	20	1.86
47713--47808	35	2.7	36	82	4	115	18	32	18	30	1.95
48084--48564	72	6.8	72	91	1	742	20	27	20	31	1.98
49201--49233	16	2.1	16	94	0	57	33	24	21	21	1.97
49772--50095	43	7.7	43	79	9	362	42	25	10	21	1.85
49772--50103	84	3.9	84	90	2	522	41	25	10	22	1.86
49772--50105	41	7.9	43	82	6	405	41	25	10	22	1.86
52751--52961	108	2.0	107	93	3	365	27	14	9	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55247--55300	23	2.3	23	100	0	108	25	40	7	25	1.82
55450--55634	14	14.1	14	66	17	76	64	19	10	5	1.45
55445--55575	52	2.6	50	84	8	176	67	19	8	5	1.37
55528--55608	20	4.0	20	83	3	117	67	16	9	6	1.38
55512--55636	40	3.2	40	76	14	136	64	20	10	5	1.45
55512--55606	40	2.3	40	90	1	145	65	18	9	6	1.43
55619--55668	23	2.3	21	86	10	66	60	26	12	2	1.43
55591--55645	14	3.9	14	92	0	74	61	21	12	3	1.46
55529--55673	20	6.6	23	71	21	80	62	20	11	5	1.49
55550--55682	69	1.9	68	85	8	180	61	21	12	5	1.49
60714--60797	2	42.0	2	100	0	168	50	50	0	0	1.00
61710--61747	17	2.4	17	86	8	53	21	5	0	73	1.02
62673--62836	60	2.7	61	83	4	208	36	15	17	30	1.91
65093--65139	24	2.0	24	84	12	62	31	10	0	57	1.33
65093--65139	23	2.0	23	84	12	60	31	10	0	57	1.33
65172--65199	14	2.0	14	100	0	56	35	14	21	28	1.92
65740--65909	39	4.2	39	73	10	126	36	16	14	32	1.89
65743--65903	44	3.9	39	74	13	144	36	16	15	31	1.90
65850--66020	52	3.2	52	84	4	209	38	14	13	34	1.85
66033--66066	18	1.9	18	88	5	52	23	0	17	58	1.38
69420--69481	31	2.0	31	96	0	115	37	30	16	16	1.90
71504--71574	37	1.9	37	94	0	124	32	25	19	22	1.98

Tables:   1

The End!