genome.fa.s17274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017274.1 Corchorus olitorius cultivar O-4 contig17307, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78808

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218--1253	17	2.1	17	89	0	54	25	5	22	47	1.73
2172--2504	179	1.9	180	86	3	483	36	14	13	35	1.86
2614--2638	5	5.0	5	100	0	50	40	0	0	60	0.97
2728--2889	80	2.0	79	91	3	263	33	16	4	45	1.69
4915--4971	27	2.1	28	83	9	73	49	10	0	40	1.37
5108--5196	46	1.9	46	88	0	133	46	21	10	22	1.81
6341--6387	21	2.2	21	92	7	78	34	14	21	29	1.93
16719--16768	26	1.9	26	91	0	82	12	2	40	46	1.52
26668--26753	43	2.0	43	97	0	163	37	20	12	29	1.90
28744--29546	401	2.0	401	98	0	1543	27	23	17	32	1.96
36970--37093	32	3.9	32	82	3	153	26	20	27	25	1.99
39300--39467	32	5.3	32	85	2	214	25	19	27	27	1.99
39293--39498	64	3.2	64	78	4	220	25	20	26	27	1.99
39292--39517	96	2.4	96	77	10	246	26	20	25	26	1.99
39586--39617	2	16.0	2	100	0	64	50	0	0	50	1.00
39592--39781	104	1.8	104	96	0	353	43	7	10	38	1.67
40914--40965	21	2.5	20	82	14	61	15	0	36	48	1.45
42013--42048	15	2.4	15	90	0	63	44	0	16	38	1.48
43804--43951	38	3.9	38	90	1	226	23	18	35	22	1.96
43981--44018	6	6.3	6	100	0	76	15	0	34	50	1.45
47370--47517	38	3.9	38	90	1	226	23	18	35	22	1.96
47547--47578	6	5.3	6	100	0	64	15	0	34	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48556--48614	30	2.0	30	93	0	100	25	27	0	47	1.52
50339--50895	282	2.0	283	93	2	969	35	15	17	32	1.91
51039--51074	18	2.0	18	94	0	63	22	13	11	52	1.72
54743--55134	35	11.2	35	90	0	595	38	8	18	35	1.81
58434--58464	14	2.2	14	94	0	53	6	3	12	77	1.08
61462--61507	22	2.1	22	87	0	65	26	45	15	13	1.82
63992--64017	12	2.2	12	100	0	52	7	15	7	69	1.35
72334--72371	17	2.2	17	90	0	58	57	18	10	13	1.63
76889--76923	14	2.4	14	85	4	52	0	5	28	65	1.15

Tables:   1

The End!