Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017275.1 Corchorus olitorius cultivar O-4 contig17308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21753

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--142
50
2.8
50
96
0
257
29
28
14
28
1.95
99--299
69
2.9
69
87
0
285
24
28
17
29
1.97
5430--5867
188
2.3
188
94
0
761
27
21
18
32
1.97
5898--6024
39
3.3
39
85
3
123
22
16
14
47
1.82
5928--6061
38
3.5
38
87
3
162
20
15
15
48
1.81
6025--6358
30
11.0
30
84
2
425
20
14
19
45
1.85
6033--6402
92
4.0
92
83
4
455
21
14
19
44
1.86
6020--6396
122
3.1
121
81
5
438
21
14
18
45
1.85
6371--6514
39
4.0
38
69
19
110
24
12
14
48
1.78
8946--8983
17
2.2
17
90
0
58
57
18
10
13
1.63
14891--14923
17
1.9
17
100
0
66
51
12
12
24
1.73
17479--18052
91
6.3
90
89
2
817
26
15
24
33
1.95
17479--18052
181
3.2
181
88
1
828
26
15
24
33
1.95
18199--18234
18
2.0
18
89
10
56
22
13
13
50
1.77
19531--19571
21
2.0
21
90
9
66
31
24
9
34
1.88

Tables:   1

The End!