Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017276.1 Corchorus olitorius cultivar O-4 contig17309, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57364

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1293--1369
28
2.7
30
78
11
90
38
11
16
32
1.85
2020--2079
27
2.2
27
85
5
77
35
10
20
35
1.86
6619--6768
77
2.0
75
86
8
209
22
32
10
35
1.87
9841--9879
2
19.5
2
100
0
78
51
0
0
48
1.00
9952--10230
43
6.6
43
83
5
372
21
9
26
41
1.84
9952--10230
83
3.3
83
91
3
425
21
9
26
41
1.84
15094--15544
225
2.0
225
96
0
839
32
26
12
27
1.93
17582--17743
79
2.1
79
97
0
306
16
22
10
50
1.75
18539--18812
136
2.0
136
98
0
530
32
18
25
23
1.97
20981--21017
19
2.0
19
89
5
58
18
2
29
48
1.62
21177--21216
15
2.6
16
92
4
64
65
12
10
12
1.49
22930--22957
2
14.0
2
100
0
56
50
0
0
50
1.00
34463--34500
17
2.2
17
100
0
76
55
0
5
39
1.23
38045--38072
2
14.0
2
100
0
56
50
0
0
50
1.00
39094--39165
31
2.3
31
75
17
78
26
4
8
61
1.43
39419--39465
13
3.8
12
78
13
51
40
0
4
55
1.19
40108--40142
11
3.2
11
91
0
61
80
17
2
0
0.84
42622--42699
40
2.0
40
87
5
113
16
11
19
52
1.74
42802--43018
109
2.0
107
96
1
398
23
10
17
48
1.78
43697--43782
43
2.1
42
89
6
131
37
23
5
33
1.79
44900--44976
31
2.5
31
93
0
127
36
10
19
33
1.86
50543--50576
6
5.8
6
89
3
52
0
17
0
82
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51165--51219
28
2.0
28
85
0
74
43
30
10
14
1.80
53053--53126
26
2.9
24
75
16
60
20
18
4
56
1.57
53084--53135
26
2.0
26
96
0
95
19
19
1
59
1.47
53293--53349
26
2.3
25
78
6
62
12
21
5
61
1.50
53328--53414
35
2.5
36
92
3
135
20
18
4
56
1.59
53396--53430
18
1.9
18
94
0
61
17
25
0
57
1.40
53440--53546
21
5.1
20
69
20
67
21
18
7
52
1.70
53502--53569
7
9.7
7
73
12
50
17
19
7
55
1.64
53440--53669
41
5.5
41
86
3
243
20
20
6
52
1.68
53635--53747
7
16.3
7
68
21
51
22
24
2
50
1.62
53517--53673
21
7.6
21
67
22
84
20
22
4
52
1.64
53635--53701
28
2.4
28
85
7
84
22
25
1
50
1.57
53669--53770
21
5.0
21
73
18
90
24
23
3
48
1.68
55407--55438
16
2.0
16
93
0
55
46
3
6
43
1.44

Tables:   1

The End!