Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017278.1 Corchorus olitorius cultivar O-4 contig17311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2184
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36


Found at i:1302 original size:20 final size:22

Alignment explanation


    Indices: 1270--1315  Score: 69
    Period size: 21  Copynumber: 2.2  Consensus size: 22

       1260 CTTTCCTCTG

                                  
       1270 TCTTTTGCTTTTTCAACT-TTT
          1 TCTTTTGCTTTTTCAACTCTTT

                            *     
       1291 TCTTTT-CTTTTTCAATTCTTT
          1 TCTTTTGCTTTTTCAACTCTTT

                
       1312 TCTT
          1 TCTT

       1316 CATTTTTCTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20   10  0.43
  21   13  0.57

ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70


Consensus pattern (22 bp):   
TCTTTTGCTTTTTCAACTCTTT
Done.