Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017279.1 Corchorus olitorius cultivar O-4 contig17312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41156

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--52
21
2.0
22
90
4
70
9
18
0
72
1.11
13--58
21
2.2
21
84
7
58
10
17
0
71
1.13
3013--3233
12
19.2
12
65
15
74
63
0
10
25
1.32
3020--3082
4
15.2
4
74
12
56
73
0
6
20
1.05
3124--3167
19
2.4
18
88
3
61
59
2
9
29
1.41
3134--3214
27
3.3
27
66
25
70
60
1
8
29
1.34
3125--3233
46
2.4
46
90
1
175
61
0
9
28
1.33
3161--3203
19
2.3
19
84
8
52
58
0
11
30
1.34
13118--13207
45
2.1
43
89
6
137
36
22
6
34
1.80
14375--14434
30
2.0
30
93
0
102
21
15
18
45
1.86
14447--14761
30
10.5
30
91
0
504
20
14
18
45
1.85
17578--17604
6
4.5
6
100
0
54
29
0
33
37
1.58
18824--18882
24
2.5
24
85
0
82
20
15
28
35
1.93
21041--21130
42
2.1
42
97
0
171
57
4
22
15
1.56
21268--21297
9
3.3
9
100
0
60
53
0
46
0
1.00
30716--30760
21
2.1
21
84
8
56
17
15
33
33
1.92
30695--30847
76
2.0
76
85
0
207
16
23
29
30
1.97
31196--31453
49
5.2
49
71
15
156
34
14
25
25
1.94
31195--31452
96
2.6
100
83
4
319
34
14
25
25
1.94
32500--32570
21
3.4
21
92
3
117
28
26
16
28
1.97
35305--35345
21
2.0
21
90
9
66
26
29
9
34
1.88
35800--35846
26
1.9
24
87
12
69
40
4
27
27
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35800--35856
28
2.1
26
81
12
62
43
3
26
26
1.70
36720--36790
21
3.4
21
83
11
92
26
26
16
29
1.97
37227--37269
22
2.0
21
86
13
61
55
16
18
9
1.67
37924--38061
68
2.0
68
94
0
240
14
18
22
44
1.86
40986--41052
31
2.2
30
92
5
109
49
11
17
20
1.79

Tables:   1

The End!