Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017284.1 Corchorus olitorius cultivar O-4 contig17317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6132
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:5481 original size:11 final size:11

Alignment explanation


    Indices: 5467--5504  Score: 58
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       5457 AGAAACAAAT

                 *     
       5467 CCAAAACAAGA
          1 CCAAAGCAAGA

                       
       5478 CCAAAGCAAGA
          1 CCAAAGCAAGA

                       
       5489 CCAAAGCAAGA
          1 CCAAAGCAAGA

            *    
       5500 GCAAA
          1 CCAAA

       5505 TTAAACTCAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  11   25  1.00

ACGTcount: A:0.58, C:0.26, G:0.16, T:0.00


Consensus pattern (11 bp):   
CCAAAGCAAGA
Done.