Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017290.1 Corchorus olitorius cultivar O-4 contig17323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56654

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5179--5219
21
2.0
21
90
0
64
12
26
14
46
1.80
8293--8352
29
2.0
30
81
12
70
40
10
16
33
1.82
9733--9772
15
2.6
16
88
4
55
15
10
12
62
1.54
15317--15347
11
2.7
12
90
10
55
35
12
19
32
1.90
15317--15376
29
2.0
30
80
6
68
38
11
18
31
1.87
15822--15848
13
2.1
13
100
0
54
48
22
7
22
1.75
19439--20007
22
26.3
22
69
12
215
35
15
10
39
1.81
19953--20075
22
6.0
20
66
20
67
37
18
6
37
1.77
20113--20240
22
5.8
22
80
7
109
32
17
9
40
1.81
20088--20238
44
3.4
44
77
5
128
33
15
9
41
1.81
20111--20298
22
8.6
21
74
8
101
34
15
9
41
1.79
20401--20516
22
5.3
22
75
12
103
39
18
8
33
1.81
20566--20738
22
7.8
22
72
12
129
40
17
8
32
1.81
20553--20783
44
5.2
44
73
12
177
38
17
8
35
1.80
20553--20762
66
3.2
66
82
4
242
39
18
8
34
1.80
20658--20783
22
5.8
21
73
10
76
38
15
9
36
1.81
22001--22054
2
26.5
2
83
10
65
51
0
3
44
1.19
22001--22047
17
2.7
17
93
3
76
53
0
4
42
1.20
23075--23173
16
6.2
16
76
2
83
8
11
31
49
1.67
23084--23174
32
2.9
32
78
1
103
8
10
28
51
1.67
25477--25528
26
2.0
26
96
0
95
44
7
21
26
1.79
30221--30268
3
16.0
3
87
8
71
35
2
0
62
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30262--30305
12
4.0
11
81
18
56
52
0
2
45
1.13
30263--30298
18
2.0
18
89
10
56
52
0
2
44
1.15
37755--37961
77
2.6
79
87
1
310
33
29
17
19
1.95
37755--37961
79
2.7
76
87
3
297
33
29
17
19
1.95
47882--48047
29
5.7
28
80
7
154
17
14
25
42
1.87
49279--49335
27
2.1
27
100
0
114
28
33
10
28
1.90
49548--49586
20
1.9
21
85
15
55
35
41
5
17
1.72
53677--53733
28
2.0
28
100
0
114
31
14
29
24
1.94
55429--55471
12
3.7
12
79
14
54
72
0
16
11
1.13
55429--55469
11
3.5
13
84
15
54
73
0
14
12
1.11

Tables:   1

The End!