Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017291.1 Corchorus olitorius cultivar O-4 contig17324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9657

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1668--1794
27
4.6
28
83
4
152
40
25
17
15
1.89
1668--1794
55
2.3
55
85
4
168
40
25
17
15
1.89
2036--3155
30
36.6
30
87
5
1424
46
17
15
20
1.83
2036--3155
61
18.3
60
86
4
1438
46
17
15
20
1.83
2328--2402
39
1.9
39
94
0
132
45
16
17
21
1.85
3341--3821
35
13.6
35
77
6
346
39
18
21
19
1.92
3341--3790
106
4.2
102
75
10
307
40
18
21
20
1.92
3647--3739
38
2.4
39
96
1
170
47
18
16
18
1.83
5058--5098
13
3.1
13
89
3
55
43
12
7
36
1.70
5068--5106
16
2.6
16
88
11
57
41
10
7
41
1.68
5520--5544
2
12.5
2
100
0
50
52
0
0
48
1.00
7973--8003
16
1.9
16
93
0
53
22
12
25
38
1.90
8266--8290
7
3.6
7
100
0
50
32
12
28
28
1.92

Tables:   1

The End!