Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017292.1 Corchorus olitorius cultivar O-4 contig17325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30534

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
436--562
27
4.6
28
84
4
152
42
25
15
15
1.87
436--562
55
2.3
55
85
4
168
42
25
15
15
1.87
1106--1365
136
1.9
136
95
0
466
25
28
17
29
1.97
1106--1396
69
4.2
69
89
2
444
25
28
17
28
1.98
1431--1567
69
2.0
67
88
2
202
27
27
15
29
1.96
1606--2045
35
12.7
35
83
7
533
32
18
21
27
1.97
1606--2045
70
6.3
70
91
3
676
32
18
21
27
1.97
2440--2513
26
2.8
27
81
4
87
16
17
25
40
1.90
10397--10442
21
2.2
21
84
7
58
19
34
19
26
1.96
11461--11511
27
1.9
27
88
4
77
15
19
9
54
1.68
11570--11638
3
23.0
3
94
5
122
34
0
0
65
0.93
13715--13759
21
2.1
21
88
8
65
22
22
26
28
1.99
17631--17676
21
2.2
21
84
7
58
19
34
19
26
1.96
20619--20654
19
1.9
18
88
5
54
27
22
8
41
1.82
27716--27741
11
2.4
11
100
0
52
7
15
7
69
1.35
28501--28542
15
2.7
15
85
3
57
14
7
14
64
1.48
30403--30444
14
3.0
14
92
0
66
0
26
0
73
0.83

Tables:   1

The End!