Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017301.1 Corchorus olitorius cultivar O-4 contig17334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33877

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239--417
32
5.5
32
89
4
270
32
25
16
25
1.96
239--417
97
1.8
99
90
4
292
32
25
16
25
1.96
239--417
65
2.8
64
91
5
279
32
25
16
25
1.96
1310--1350
13
3.1
13
89
3
55
36
7
12
43
1.70
2853--3256
35
11.5
35
84
2
468
17
23
20
38
1.93
2853--3262
70
5.8
70
87
2
561
17
22
20
38
1.93
2861--3256
105
3.7
105
85
1
531
17
22
20
38
1.93
3641--3689
24
2.0
24
84
0
62
61
4
14
20
1.49
3636--3704
8
8.8
8
71
7
52
62
2
13
21
1.44
3649--3704
24
2.3
24
87
6
78
57
3
16
23
1.55
3723--3855
43
3.0
44
87
6
189
63
0
11
24
1.33
3759--3834
18
3.8
19
72
25
68
63
0
11
25
1.28
5001--5639
35
17.9
35
83
3
657
17
22
20
39
1.92
5001--5639
107
6.0
106
86
3
780
17
22
20
39
1.92
13559--13629
29
2.5
29
97
2
135
43
18
11
26
1.83
13828--13865
11
3.5
11
85
7
51
18
0
2
78
0.86
16512--17309
154
5.2
154
94
0
1382
20
19
19
39
1.92
16503--17309
307
2.6
308
97
0
1508
21
19
19
39
1.93

Tables:   1

The End!