Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017305.1 Corchorus olitorius cultivar O-4 contig17338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93088

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1349--1425
23
3.2
24
80
14
88
16
15
23
44
1.86
1353--1410
25
2.4
24
83
13
75
15
15
24
44
1.85
13544--13612
29
2.3
29
80
11
70
24
4
20
50
1.66
26084--26123
15
2.6
16
88
4
55
15
10
12
62
1.54
26644--26692
21
2.3
21
82
6
55
40
16
28
14
1.87
29146--29186
21
2.0
21
90
0
64
26
46
0
26
1.53
29340--29373
16
2.1
16
88
5
50
29
17
5
47
1.71
31673--31725
28
1.9
27
84
3
70
58
9
16
15
1.62
44587--44622
15
2.3
16
90
4
56
55
25
0
19
1.43
48616--48655
19
2.2
19
86
13
57
65
0
30
5
1.14
49281--49432
41
3.7
41
78
3
169
42
26
9
21
1.83
49239--49534
84
3.5
84
83
7
359
37
26
12
24
1.90
61526--61596
21
3.4
21
94
3
117
28
18
26
26
1.98
68523--68594
19
3.7
19
68
23
51
50
23
12
13
1.76
68503--68588
39
2.2
40
82
14
99
47
24
11
16
1.79
69348--69399
25
2.0
27
85
11
72
1
1
13
82
0.84
69363--69397
15
2.4
15
85
4
54
0
0
11
88
0.51
76371--76447
27
2.8
27
84
2
91
19
20
23
36
1.95
78328--78354
14
1.9
14
100
0
54
29
44
18
7
1.77
80359--80388
16
1.9
15
93
6
51
50
6
10
33
1.62
80809--80835
14
1.9
14
100
0
54
7
18
44
29
1.77

Tables:   1

The End!