Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017306.1 Corchorus olitorius cultivar O-4 contig17339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4177
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30


Found at i:2429 original size:24 final size:24

Alignment explanation


    Indices: 2401--2450  Score: 91
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2391 AATTCCTTAA

                  *                 
       2401 TCTATATTTATATAAACAAGAATG
          1 TCTATACTTATATAAACAAGAATG

                                    
       2425 TCTATACTTATATAAACAAGAATG
          1 TCTATACTTATATAAACAAGAATG

              
       2449 TC
          1 TC

       2451 GATGGCGACG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36


Consensus pattern (24 bp):   
TCTATACTTATATAAACAAGAATG
Done.