Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017310.1 Corchorus olitorius cultivar O-4 contig17343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37


Found at i:1333 original size:129 final size:130

Alignment explanation


    Indices: 1145--1386  Score: 364
    Period size: 129  Copynumber: 1.9  Consensus size: 130

       1135 GTCATTAAAG

                                                      *  *                   
       1145 AAATATATTTTAAAAATTCTAATATATCTAAGTTTTTTAATTTAATTAGTAAAATGGTAAAAATA
          1 AAATATATTTTAAAAATTCTAATATA-CTAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATA

                                     *         *                             
       1210 AAATAGGTATAAAGATATTAAATTTTA-TACAATAGAAATAGAGTTTTTAGTTGAGTAAAATTAT
         65 AAATAGGTATAAAGATATTAAATTTAATTA-AATAAAAATAGAGTTTTTAGTTGAGTAAAATTAT

              
       1274 AA
        129 AA

                                           *                                 
       1276 AAATATA-TTTAAAAATTCTAATATA-TAATTTTTTTTAATTAAAATAGTAAAATGGTAAAAATA
          1 AAATATATTTTAAAAATTCTAATATACTAA-GTTTTTTAATTAAAATAGTAAAATGGTAAAAATA

                  *     *       *                           
       1339 AAATAGTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTT
         65 AAATAGGTATAAAGATATTAAATTTAATTAAATAAAAATAGAGTTTTT


Statistics
Matches: 101,  Mismatches: 8, Indels: 6
        0.88            0.07        0.05

Matches are distributed among these distances:
 128    3  0.03
 129   71  0.70
 130   20  0.20
 131    7  0.07

ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40


Consensus pattern (130 bp):   
AAATATATTTTAAAAATTCTAATATACTAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATAA
AATAGGTATAAAGATATTAAATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAATTATAA
Done.