Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017312.1 Corchorus olitorius cultivar O-4 contig17345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8685

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
871--1079
52
4.1
52
93
2
345
28
26
11
33
1.90
870--1079
102
2.1
100
90
4
339
28
26
10
34
1.90
1881--2024
50
2.9
50
86
2
211
38
12
17
31
1.87
1883--2036
48
3.1
48
86
2
218
38
11
16
33
1.84
2642--2722
5
15.6
5
73
20
60
19
2
17
60
1.47
2653--2703
16
3.1
16
88
5
75
17
3
17
60
1.50
2696--2740
14
3.4
14
90
6
67
17
0
13
68
1.20
2648--2724
38
2.1
37
88
9
113
18
2
16
62
1.44
2643--2736
24
3.9
24
73
24
65
19
2
15
62
1.42
3114--3161
10
4.5
11
82
12
64
6
10
0
83
0.81
3531--3679
76
2.0
76
82
2
183
30
20
12
36
1.89

Tables:   1

The End!