Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017313.1 Corchorus olitorius cultivar O-4 contig17346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43045

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3822--3851
2
15.0
2
92
0
51
53
46
0
0
1.00
4252--4299
16
3.0
16
96
0
87
47
18
20
12
1.81
4399--4507
41
2.9
36
79
12
128
35
17
14
32
1.90
4426--4635
41
5.1
41
83
5
226
38
19
11
30
1.88
4426--4635
85
2.5
84
82
8
243
38
19
11
30
1.88
6365--6505
76
1.9
75
91
4
230
49
11
21
17
1.78
7247--7282
16
2.2
16
90
0
54
58
16
16
8
1.61
7378--7602
41
5.4
41
87
4
297
37
19
13
29
1.90
7378--7602
83
2.7
84
86
3
319
37
19
13
29
1.90
7378--7620
127
2.0
123
81
5
283
37
19
13
29
1.90
13327--13382
22
2.6
22
91
5
89
42
16
19
21
1.89
13338--13527
74
2.6
74
94
4
334
41
13
21
23
1.89
13490--13569
20
3.9
20
87
6
108
42
15
21
21
1.88
13772--13805
15
2.3
15
100
0
68
17
20
0
61
1.34
13870--13945
21
3.6
21
92
3
127
25
28
17
28
1.97
15761--15865
33
3.2
33
81
8
115
45
21
6
25
1.76
18317--18413
21
4.6
21
93
0
167
25
26
18
28
1.98
27028--27071
21
2.1
21
86
0
61
29
9
6
54
1.58
27332--27357
12
2.2
12
100
0
52
38
7
0
53
1.30
30003--30044
21
2.0
21
90
9
68
33
28
16
21
1.95
32777--32840
33
1.9
33
87
6
94
45
25
7
21
1.78
35092--35221
65
2.0
65
92
0
215
21
29
26
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35411--35452
21
2.0
21
90
0
66
38
28
14
19
1.90
42542--42577
2
18.0
2
88
11
56
50
0
2
47
1.15

Tables:   1

The End!