Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001732.1 Corchorus olitorius cultivar O-4 contig01732, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31


Found at i:582 original size:2 final size:2

Alignment explanation


    Indices: 569--605  Score: 51
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        559 ATCGAAAAAA

                                     *                                
        569 AG AG A- AG A- AG AG AG AA AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

        606 AATTGCTTTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   1    2  0.06
   2   29  0.94

ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00


Consensus pattern (2 bp):   
AG

Done.