Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017326.1 Corchorus olitorius cultivar O-4 contig17359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54167

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7186--7220
12
2.9
12
91
0
61
40
0
5
54
1.24
7185--7253
19
3.6
20
71
15
65
42
0
2
55
1.15
11686--11714
1
29.0
1
100
0
58
0
0
0
100
0.00
12476--12578
28
3.7
27
77
12
118
34
12
11
40
1.80
14678--14760
39
2.1
39
93
4
141
40
13
16
28
1.86
15076--15151
21
3.6
21
96
0
134
28
18
26
26
1.98
18028--18541
133
3.9
132
87
4
637
41
15
19
22
1.90
18028--18541
66
7.8
66
88
4
637
41
15
19
22
1.90
21515--21549
18
1.9
18
94
0
61
42
14
17
25
1.86
22941--23013
36
2.0
36
97
0
137
39
12
27
20
1.88
31122--31170
21
2.4
20
83
6
62
51
8
16
24
1.71
31261--31367
27
3.9
28
78
10
114
38
24
19
17
1.93
33398--33488
21
4.3
21
94
0
155
26
17
28
27
1.98
34550--34591
18
2.3
18
87
0
57
14
33
11
40
1.82
36290--36324
14
2.5
14
95
0
61
80
11
2
5
1.00
37902--37951
14
3.5
14
83
8
57
42
10
14
34
1.78
39517--39620
38
2.7
38
78
8
113
35
16
20
27
1.94
42206--42336
49
2.7
47
83
8
156
48
6
16
29
1.69
51416--51452
15
2.5
15
90
0
56
18
27
13
40
1.88
52429--52558
49
2.7
47
83
8
163
50
6
14
28
1.69

Tables:   1

The End!