Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017329.1 Corchorus olitorius cultivar O-4 contig17362, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19046

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1041--1093
25
2.2
25
83
6
65
41
0
26
32
1.56
5266--5353
42
2.1
42
95
0
158
37
6
18
37
1.77
6989--7064
39
1.9
39
97
0
143
21
18
18
42
1.90
7217--7268
16
3.6
14
82
7
52
42
17
3
36
1.67
7494--7542
23
2.2
23
89
10
75
44
8
4
42
1.53
8960--9004
10
4.5
10
91
0
72
26
22
17
33
1.96
13410--13478
35
1.9
36
88
8
106
23
10
7
59
1.54
14031--14427
202
2.0
203
96
0
742
45
8
10
35
1.70
14535--14618
42
2.0
40
90
4
132
36
4
8
50
1.54
14680--14887
103
2.0
103
96
0
380
44
8
6
40
1.60
14950--15018
6
11.8
6
90
6
106
53
0
13
33
1.39
14976--15010
10
3.3
10
85
14
52
51
0
17
31
1.45
14947--15010
22
3.1
22
89
8
91
54
0
12
32
1.38
14962--15021
28
2.1
28
93
0
102
51
0
13
35
1.41
15197--15224
13
2.2
13
100
0
56
7
21
7
64
1.43
15196--15230
13
2.8
12
87
8
52
5
25
8
60
1.49
15302--15382
22
3.9
21
79
11
85
43
7
8
40
1.63
15306--15391
20
4.1
21
78
11
88
45
9
6
38
1.63

Tables:   1

The End!