genome.fa.s17330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017330.1 Corchorus olitorius cultivar O-4 contig17363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74831

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14611--14636	7	3.7	7	100	0	52	0	11	0	88	0.52
17301--17361	29	2.1	30	87	3	88	42	3	3	50	1.34
18440--18469	2	15.0	2	100	0	60	50	0	0	50	1.00
18893--18944	27	1.9	28	84	7	72	30	5	17	46	1.71
20140--20210	37	1.9	37	91	0	115	32	26	18	22	1.97
22186--22244	28	2.2	28	85	8	79	25	11	15	47	1.79
22916--22990	21	3.5	21	71	20	66	44	9	13	33	1.76
22907--23006	43	2.3	42	80	10	121	42	9	15	34	1.78
23004--23078	22	3.4	22	92	0	114	36	14	18	30	1.91
22976--23079	44	2.4	44	79	6	122	37	13	17	31	1.88
23060--23101	22	1.9	22	90	0	66	30	11	16	40	1.85
22907--23094	44	4.3	43	69	15	111	38	11	16	32	1.85
23172--23293	22	5.5	22	72	3	91	33	12	17	36	1.87
38049--38251	27	7.5	26	95	2	307	36	22	10	31	1.87
38049--38251	54	3.8	54	94	0	343	36	22	10	31	1.87
38265--38327	27	2.3	27	89	5	101	47	11	14	26	1.77
38247--38295	21	2.3	21	96	0	89	46	16	8	28	1.75
38557--38625	36	1.9	36	100	0	138	59	14	5	20	1.56
51599--51646	24	2.0	25	87	4	71	14	8	4	72	1.23
52531--52584	22	2.5	22	96	0	99	25	22	29	22	1.99
55189--55277	29	3.0	30	80	6	108	34	21	11	32	1.89
56816--56877	22	2.8	22	85	7	72	45	9	6	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56835--56899	31	2.1	32	82	8	80	46	9	10	33	1.71
56880--57260	90	4.3	87	74	9	272	35	8	17	38	1.81
56887--57487	22	28.1	21	71	13	288	34	8	18	37	1.82
62058--62134	27	2.8	27	82	5	84	41	23	15	19	1.89
64920--64961	21	2.0	21	86	9	59	33	4	16	45	1.69
71696--71747	24	2.2	24	96	0	95	61	5	13	19	1.52

Tables:   1

The End!