Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017331.1 Corchorus olitorius cultivar O-4 contig17364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43949

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
158--382
113
2.0
113
100
0
450
44
16
12
26
1.83
7763--7948
22
8.5
22
74
10
150
35
13
9
40
1.78
7763--7947
65
2.8
65
78
4
169
35
14
9
41
1.77
10383--10625
119
2.0
125
85
11
340
34
10
4
50
1.55
11062--11118
17
3.6
16
79
13
64
7
14
36
42
1.72
12732--12777
16
2.8
17
86
6
76
4
15
39
41
1.67
12800--12840
16
2.5
17
76
15
50
4
14
36
43
1.67
18444--18473
15
2.0
15
100
0
60
46
6
6
40
1.56
29216--29329
59
1.9
60
94
1
203
31
8
25
34
1.86
32181--32227
23
2.0
23
100
0
94
36
8
25
29
1.86
37221--37282
31
2.0
31
87
0
88
29
16
4
50
1.65

Tables:   1

The End!