Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017332.1 Corchorus olitorius cultivar O-4 contig17365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29109

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
986--1040
26
2.1
26
83
6
67
34
10
1
52
1.47
1687--1778
37
2.5
37
100
0
184
34
2
16
46
1.59
2524--2558
13
2.8
13
91
4
54
5
37
2
54
1.39
8450--8516
32
2.1
32
97
0
125
40
13
13
32
1.83
9986--10037
27
1.9
27
100
0
104
23
15
15
46
1.83
14401--14439
15
2.5
15
83
4
51
74
5
7
12
1.20
14414--14464
24
2.1
25
85
10
70
68
5
7
17
1.34
15045--15081
16
2.2
17
90
4
58
70
0
24
5
1.08
19896--20019
66
1.9
66
89
3
196
34
19
20
25
1.96
25640--25757
59
2.0
59
100
0
236
20
33
18
27
1.96
26160--26196
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!