genome.fa.s17333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017333.1 Corchorus olitorius cultivar O-4 contig17366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62741

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3148--3200	24	2.1	26	82	6	65	43	7	0	49	1.31
5161--5200	21	1.9	21	84	0	53	27	0	37	35	1.57
5295--5331	19	2.0	19	94	5	67	32	0	0	67	0.91
5301--5342	19	2.2	19	86	0	57	38	2	0	59	1.10
7522--7665	75	1.9	76	80	7	168	32	18	14	34	1.91
12906--12944	18	2.1	19	86	13	55	38	5	17	38	1.72
13389--13415	12	2.2	12	100	0	54	48	0	14	37	1.45
14049--14163	58	2.0	58	86	3	160	33	14	20	32	1.93
14214--14412	31	6.5	31	74	13	182	35	19	19	25	1.96
14218--14380	60	2.7	60	92	1	265	35	19	19	25	1.95
14453--14618	31	5.5	30	67	18	121	27	19	19	33	1.96
14454--14614	60	2.7	60	93	2	270	26	19	18	34	1.95
15864--15933	36	1.9	36	88	5	106	21	10	10	58	1.59
16530--16558	3	9.7	3	100	0	58	34	0	0	65	0.93
16955--17001	25	1.9	24	95	4	85	55	4	6	34	1.45
16992--17072	39	2.0	40	92	2	137	37	3	7	51	1.48
16997--17060	21	3.2	21	68	20	64	37	3	9	50	1.51
18706--18783	40	2.0	40	92	0	129	37	23	8	30	1.85
23728--23766	10	3.8	10	87	12	53	35	0	2	61	1.10
24371--24447	30	2.5	31	91	4	120	37	25	22	14	1.92
24371--24530	31	5.2	31	84	1	160	32	25	24	17	1.97
26583--26615	12	2.6	13	85	9	50	69	18	0	12	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28235--29294	529	2.0	529	100	0	2120	38	14	12	34	1.84
39080--39107	6	4.7	6	100	0	56	35	17	0	46	1.49
41625--41668	23	1.9	23	85	0	61	43	13	6	36	1.71
45450--45501	27	1.9	26	85	14	70	48	1	9	40	1.47
45824--46090	142	1.9	139	82	9	335	38	10	1	49	1.47
48679--49125	41	10.9	41	89	2	601	38	18	13	29	1.89
50867--51042	61	2.8	62	86	1	255	45	14	21	18	1.85
51738--51772	16	2.2	16	100	0	70	45	17	25	11	1.81
51836--52241	41	9.9	41	89	2	555	38	18	13	29	1.89
56014--56054	12	3.2	13	83	12	50	85	0	2	12	0.70
56020--56052	17	2.0	16	94	5	57	84	0	0	15	0.61
59244--59443	75	2.7	75	88	0	265	41	17	24	18	1.90

Tables:   1

The End!