Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017339.1 Corchorus olitorius cultivar O-4 contig17372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124035

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7099--7141
13
3.2
13
86
6
59
18
0
4
76
0.95
18127--18177
17
3.0
17
72
11
50
50
11
7
29
1.67
19075--19242
84
2.0
84
97
0
318
25
17
14
42
1.87
22251--22350
39
2.6
39
80
10
116
30
9
7
54
1.58
25407--25446
21
1.9
21
84
0
53
20
52
20
7
1.70
37203--37280
1
78.0
1
71
0
57
85
14
0
0
0.59
37203--37292
13
7.0
13
88
9
132
84
14
0
1
0.68
37204--37292
22
4.1
21
85
5
108
84
14
0
1
0.69
37208--37292
4
21.8
4
77
11
79
83
15
0
1
0.71
54310--54334
13
1.9
13
100
0
50
72
8
8
12
1.29
55294--55348
17
2.9
18
79
15
58
49
5
0
45
1.25
57088--57151
33
1.9
33
93
0
110
40
4
14
40
1.66
61067--61098
2
16.0
2
100
0
64
50
0
0
50
1.00
61207--61436
22
10.5
22
71
11
107
32
18
11
38
1.86
61720--61796
30
2.5
31
85
2
102
25
29
16
27
1.97
62465--62521
30
1.9
30
85
0
78
57
3
10
28
1.48
62463--62534
33
2.2
32
76
11
76
55
2
9
31
1.47
62911--63149
22
11.1
22
70
10
109
35
15
9
39
1.80
62946--63098
82
1.9
82
83
1
198
32
16
10
40
1.82
63250--63438
22
8.7
22
74
9
131
35
13
9
41
1.77
63250--63438
44
4.4
43
75
14
158
35
13
9
41
1.77
63538--63600
22
2.8
23
87
4
101
41
17
7
33
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63717--63767
22
2.3
22
83
6
59
43
21
3
31
1.71
63789--63914
22
5.7
22
70
15
98
35
15
11
37
1.83
63773--63908
67
2.0
66
84
4
175
35
16
11
37
1.84
66552--66610
28
2.1
28
83
0
73
54
0
10
35
1.34
67449--67508
10
6.1
10
86
9
88
35
0
8
56
1.29
67445--67503
18
3.2
18
88
9
91
35
0
6
57
1.25
69871--69963
41
2.3
41
88
0
141
45
17
2
35
1.60
73791--73829
18
2.1
18
85
4
51
28
15
15
41
1.87
84760--84790
2
15.5
2
100
0
62
51
0
0
48
1.00
85915--85953
18
2.3
18
91
8
64
12
7
23
56
1.62
86626--86673
18
2.8
16
79
14
51
79
0
20
0
0.74
86625--86670
13
3.4
14
79
5
51
80
0
19
0
0.71
86640--86673
17
2.1
16
88
5
50
76
0
23
0
0.79
101128--101245
11
11.2
11
69
8
84
53
0
2
44
1.14
104522--104581
18
3.3
18
90
0
93
38
41
11
8
1.72
107039--107075
17
2.2
17
100
0
74
21
0
29
48
1.50
107353--107398
12
3.7
13
77
16
53
36
0
0
63
0.95
107354--107402
16
3.1
17
76
23
54
38
0
0
61
0.96
109372--109449
41
1.9
41
89
0
120
41
14
3
41
1.63
109746--109811
33
2.0
33
93
0
114
46
10
18
24
1.80
109997--110158
4
40.8
4
98
1
317
50
0
24
25
1.50
111271--111331
29
2.1
30
87
3
88
42
3
3
50
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112297--112347
22
2.2
24
86
10
79
56
0
0
43
0.99
118035--118064
6
4.8
6
92
8
51
83
0
0
16
0.65

Tables:   1

The End!