Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017340.1 Corchorus olitorius cultivar O-4 contig17373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23023
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:1434 original size:2 final size:2

Alignment explanation


    Indices: 1427--1467  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       1417 CCTAGATAGG

                                                                         
       1427 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       1468 ATGGACATTG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.