Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017341.1 Corchorus olitorius cultivar O-4 contig17374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44431

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7942--7983
17
2.5
17
100
0
84
47
11
11
28
1.76
11332--11672
59
5.9
57
87
5
415
20
19
22
37
1.94
11332--11674
28
11.9
28
82
7
384
20
18
22
37
1.94
11334--11674
87
3.9
84
80
9
357
20
19
22
37
1.94
15685--15735
27
1.9
27
84
4
68
49
1
15
33
1.56
16738--16780
21
2.0
22
95
4
79
9
20
55
13
1.66
17169--17228
29
2.1
29
100
0
120
16
23
28
31
1.96
18398--18448
24
2.1
25
85
10
70
72
3
5
17
1.20
19363--19403
21
1.9
22
90
5
66
12
24
53
9
1.68
21540--21580
2
20.5
2
94
0
73
48
0
2
48
1.14
23221--23283
22
2.8
22
80
4
63
41
6
17
34
1.75
23393--23641
22
11.4
22
70
12
145
33
11
19
34
1.88
26527--27096
22
25.6
23
69
15
168
37
10
16
35
1.83
26509--26804
44
6.7
43
76
13
187
41
9
16
32
1.81
26703--26792
46
1.9
47
86
4
128
43
8
18
28
1.80
26509--27009
66
7.5
66
72
12
281
39
9
16
34
1.82
28556--28580
2
12.5
2
100
0
50
48
0
0
52
1.00
31336--31633
144
2.1
144
86
2
411
24
23
19
32
1.97
37633--37705
37
2.0
37
94
2
130
27
4
16
52
1.62
37965--38036
36
2.0
36
100
0
144
55
22
2
19
1.56
37979--38036
16
3.4
16
75
25
64
56
20
1
20
1.50
37979--38042
18
3.6
17
70
25
53
53
25
1
20
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40662--40695
16
2.1
16
89
10
52
2
14
5
76
1.09
43337--43380
22
2.0
23
86
4
63
36
25
9
29
1.86

Tables:   1

The End!