Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017346.1 Corchorus olitorius cultivar O-4 contig17379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3258
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27


Found at i:1500 original size:13 final size:13

Alignment explanation


    Indices: 1482--1507  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1472 CTTGGCATGA

                         
       1482 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
       1495 GTGATGATTTTTG
          1 GTGATGATTTTTG

       1508 TTGTTACCCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG

Found at i:1894 original size:16 final size:15

Alignment explanation


    Indices: 1860--1898  Score: 51
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1850 GGGCTGAAAT

                  *        
       1860 TAATTAATTAATTAA
          1 TAATTATTTAATTAA

                     *      
       1875 TAATTATTTTATTGAA
          1 TAATTATTTAATT-AA

                    
       1891 TAATTATT
          1 TAATTATT

       1899 ATCAAAAATC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   11  0.52
  16   10  0.48

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54


Consensus pattern (15 bp):   
TAATTATTTAATTAA
Done.