Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017350.1 Corchorus olitorius cultivar O-4 contig17383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17093

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394--907
22
23.5
22
69
16
182
34
15
9
39
1.81
467--515
23
2.2
22
86
13
66
28
14
4
53
1.59
409--1562
44
26.9
43
66
17
242
34
16
9
38
1.82
986--1334
22
16.0
22
69
11
171
33
16
9
39
1.81
1336--1562
22
10.3
22
74
11
135
37
18
8
35
1.82
1350--1566
66
3.3
68
83
5
232
37
18
9
34
1.83
1729--1766
19
2.0
20
85
15
53
63
2
5
28
1.30
1873--2256
146
2.6
148
89
6
596
42
9
11
36
1.74
3519--4996
144
10.3
144
88
0
2091
28
25
15
31
1.95
14453--14508
28
2.0
29
89
3
87
21
26
14
37
1.92
14701--14760
29
2.1
30
87
6
88
40
15
25
20
1.90
15321--15699
123
3.0
123
94
3
623
37
10
1
50
1.47
15685--15723
14
2.9
13
80
3
51
41
2
2
53
1.28
15354--15739
123
3.0
122
83
10
404
37
9
1
52
1.43

Tables:   1

The End!