genome.fa.s17351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017351.1 Corchorus olitorius cultivar O-4 contig17384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36873

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--824	32	2.0	32	100	0	128	40	3	12	43	1.58
3489--3513	7	3.6	7	100	0	50	32	12	12	44	1.78
6966--7087	29	4.2	29	93	0	208	27	31	24	17	1.97
8733--8776	2	21.5	2	90	4	70	47	4	0	47	1.22
8992--9072	39	2.0	40	92	2	137	50	8	3	37	1.51
9063--9109	25	1.9	24	91	4	76	31	6	8	53	1.57
9182--9594	204	2.0	204	91	3	663	36	10	8	45	1.69
10110--10179	36	1.9	36	91	0	113	60	7	11	21	1.55
11446--11558	58	1.9	58	89	3	174	33	20	14	31	1.92
14145--14202	30	1.9	30	92	0	98	18	25	12	43	1.85
14625--14657	14	2.3	15	89	5	50	6	24	45	24	1.75
16245--16397	72	2.1	72	83	4	193	27	24	14	33	1.94
22864--22908	18	2.5	18	85	7	56	44	11	0	44	1.39
22965--23029	21	3.1	20	78	12	69	43	9	0	47	1.35
22997--23029	15	2.2	15	100	0	66	42	12	0	45	1.41
23225--23288	17	3.2	21	68	20	64	50	9	3	37	1.51
23213--23293	39	2.0	40	95	2	146	50	7	3	38	1.48
24151--24220	36	1.9	36	88	0	104	58	8	10	22	1.57
25487--25602	59	2.0	58	88	5	171	31	19	14	33	1.92
32003--32066	32	2.0	33	90	3	103	53	15	20	10	1.72
32056--32147	25	3.9	23	71	18	66	43	28	14	14	1.84
32178--32241	31	2.0	32	87	3	94	31	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36084--36143	31	1.9	31	86	6	86	33	23	11	31	1.91
36427--36621	100	2.0	99	89	1	300	34	13	12	40	1.82
36710--36780	23	3.1	23	77	4	72	22	14	47	15	1.81
36698--36761	23	2.9	22	79	9	76	25	17	42	15	1.88

Tables:   1

The End!