Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017352.1 Corchorus olitorius cultivar O-4 contig17385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6371
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1046 original size:60 final size:60

Alignment explanation


    Indices: 964--1084  Score: 233
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        954 CGAAATTTTT

                       *                                                
        964 ATTATTCTTTTTGTTTATTAACTCCAACTTTTACAAACATTGAAATTTCAATTTTCGGAG
          1 ATTATTCTTTTCGTTTATTAACTCCAACTTTTACAAACATTGAAATTTCAATTTTCGGAG

                                                                        
       1024 ATTATTCTTTTCGTTTATTAACTCCAACTTTTACAAACATTGAAATTTCAATTTTCGGAG
          1 ATTATTCTTTTCGTTTATTAACTCCAACTTTTACAAACATTGAAATTTCAATTTTCGGAG

             
       1084 A
          1 A

       1085 GGAGGAAAAG


Statistics
Matches: 60,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  60   60  1.00

ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45


Consensus pattern (60 bp):   
ATTATTCTTTTCGTTTATTAACTCCAACTTTTACAAACATTGAAATTTCAATTTTCGGAG

Found at i:5532 original size:6 final size:6

Alignment explanation


    Indices: 5521--5551  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       5511 GGATATATAC

                                                 
       5521 ATCTAT ATCTAT ATCTAT ATCTAT AT-TAT AT
          1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT

       5552 TAAAAAGTAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52


Consensus pattern (6 bp):   
ATCTAT

Done.