Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017353.1 Corchorus olitorius cultivar O-4 contig17386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5346
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:661 original size:3 final size:3

Alignment explanation


    Indices: 653--677  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        643 TTTTCTAAAA

                                             
        653 AAT AAT AAT AAT AAT AAT AAT AAT A
          1 AAT AAT AAT AAT AAT AAT AAT AAT A

        678 TTTTCCTTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:3267 original size:22 final size:21

Alignment explanation


    Indices: 3222--3263  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3212 TTATAATGAC

                                 
       3222 TTAATGCTATGATTGCCTTGA
          1 TTAATGCTATGATTGCCTTGA

                    *             
       3243 TTAATGCTTTGAATTG-CTTGA
          1 TTAATGCTATG-ATTGCCTTGA

       3264 ATTACTTGAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   15  0.79
  22    4  0.21

ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45


Consensus pattern (21 bp):   
TTAATGCTATGATTGCCTTGA
Done.