Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017354.1 Corchorus olitorius cultivar O-4 contig17387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70273

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1483--1545
32
2.0
32
100
0
126
44
12
1
41
1.52
7706--7795
45
2.1
42
89
8
137
38
22
5
33
1.77
14787--14843
10
5.6
10
91
4
96
40
21
8
29
1.83
15355--15408
17
3.2
17
71
10
56
27
9
16
46
1.78
15343--15450
40
2.9
38
80
12
116
29
12
14
43
1.82
22895--22932
19
2.1
19
95
5
69
31
21
21
26
1.98
23934--23984
25
2.0
25
81
7
59
45
7
17
29
1.77
25514--25634
60
2.0
60
96
0
224
35
26
16
21
1.94
28164--28210
24
2.0
24
83
8
60
4
40
8
46
1.54
30381--30452
26
2.7
27
73
4
74
36
25
19
19
1.95
41818--41855
1
38.0
1
100
0
76
100
0
0
0
0.00
53339--53446
31
3.5
31
74
9
114
33
21
19
25
1.97
53487--53588
31
3.4
31
70
15
104
22
21
21
34
1.97
53517--53610
29
3.2
29
67
16
84
27
22
21
28
1.99
53487--53647
60
2.7
61
93
2
265
25
21
19
33
1.97
62203--62252
21
2.4
21
96
0
91
44
14
10
32
1.78
62818--62851
14
2.4
14
90
5
50
23
2
0
73
0.97
69550--69604
13
4.5
12
78
17
51
58
10
1
29
1.43

Tables:   1

The End!