Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017356.1 Corchorus olitorius cultivar O-4 contig17389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30086

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1258--1548
43
6.8
42
84
8
383
21
11
25
41
1.87
1257--1548
128
2.3
128
96
0
530
21
11
25
41
1.87
1258--1548
85
3.4
85
86
7
385
21
11
25
41
1.87
3881--3941
30
2.0
31
87
3
88
34
9
18
37
1.83
15088--15424
129
2.6
128
95
0
602
21
10
26
40
1.86
15091--15424
172
1.9
171
89
5
523
20
11
26
41
1.86
15088--15424
44
7.8
43
87
5
486
21
10
26
40
1.86
17360--17390
14
2.2
14
100
0
62
51
48
0
0
1.00
19200--19238
20
2.0
20
100
0
78
41
10
15
33
1.81
23833--23871
20
2.0
20
100
0
78
41
10
15
33
1.81
27289--27536
107
2.4
104
85
6
299
41
10
8
39
1.69
27342--27539
107
1.9
105
91
4
326
41
9
9
39
1.69

Tables:   1

The End!