Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017357.1 Corchorus olitorius cultivar O-4 contig17390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9925
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:2464 original size:2 final size:2

Alignment explanation


    Indices: 2457--2489  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       2447 TTATATGCTG

                                                             
       2457 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       2490 TGGTTGTTTG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.