Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017358.1 Corchorus olitorius cultivar O-4 contig17391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16361
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28


Found at i:9492 original size:59 final size:60

Alignment explanation


    Indices: 9371--9493  Score: 214
    Period size: 59  Copynumber: 2.1  Consensus size: 60

       9361 ATCATACATA

                                            *                           
       9371 TAAA-CCATTTTCATATGAGACTCATATAGGTGCAATTATCAGACAACCAATTGAATGTC
          1 TAAATCCATTTTCATATGAGACTCATATAGGTACAATTATCAGACAACCAATTGAATGTC

                                              *                         
       9430 TAAATCCATTTTCATATGAGACTCATATAGGTACCA-TATCAGACAACCAATTGAATGTC
          1 TAAATCCATTTTCATATGAGACTCATATAGGTACAATTATCAGACAACCAATTGAATGTC

                 
       9489 TAAAT
          1 TAAAT

       9494 TTTCATACTA


Statistics
Matches: 61,  Mismatches: 2, Indels: 2
        0.94            0.03        0.03

Matches are distributed among these distances:
  59   32  0.52
  60   29  0.48

ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31


Consensus pattern (60 bp):   
TAAATCCATTTTCATATGAGACTCATATAGGTACAATTATCAGACAACCAATTGAATGTC
Done.