Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017359.1 Corchorus olitorius cultivar O-4 contig17392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29141

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1622--1688
30
2.2
30
80
17
77
5
17
0
76
0.99
1661--1685
11
2.3
11
100
0
50
0
24
0
76
0.80
1616--1682
19
3.7
17
75
18
55
4
19
0
76
0.96
5963--5989
2
13.5
2
100
0
54
51
0
0
48
1.00
6730--6777
19
2.6
18
77
12
53
39
0
2
58
1.10
6839--6887
22
2.2
22
92
0
80
2
40
4
53
1.32
6852--6898
22
2.1
22
84
7
60
10
38
2
48
1.50
7784--7840
12
5.0
12
74
18
59
56
1
1
40
1.20
7904--7930
14
1.9
14
100
0
54
7
14
48
29
1.71
9204--9233
10
3.0
10
95
0
51
70
16
0
13
1.18
12609--12970
193
1.9
193
94
0
643
35
13
18
33
1.89
17296--17410
53
2.2
53
89
4
171
40
9
16
33
1.81
21709--21764
27
2.1
27
83
6
69
30
16
7
46
1.73
22679--22712
7
4.7
7
89
7
50
64
5
0
29
1.17

Tables:   1

The End!