Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001736.1 Corchorus olitorius cultivar O-4 contig01736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3435
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34


Found at i:2297 original size:2 final size:2

Alignment explanation


    Indices: 2290--2314  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       2280 CCTATACACC

                                                 
       2290 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       2315 CTTTTTTTTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2952 original size:23 final size:22

Alignment explanation


    Indices: 2899--2940  Score: 75
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2889 AAGATAATAA

                *                 
       2899 TATAGTTTTTAGAATAATCACT
          1 TATACTTTTTAGAATAATCACT

                                
       2921 TATACTTTTTAGAATAATCA
          1 TATACTTTTTAGAATAATCA

       2941 TTGTAGCTTT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45


Consensus pattern (22 bp):   
TATACTTTTTAGAATAATCACT
Done.