Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017369.1 Corchorus olitorius cultivar O-4 contig17402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6895
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:5320 original size:18 final size:19

Alignment explanation


    Indices: 5285--5321  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       5275 GAAGTTCGTG

                               
       5285 TTTGAAGACAAGTTGAAGA
          1 TTTGAAGACAAGTTGAAGA

                     *         
       5304 TTTGAAGACCA-TTGAAGA
          1 TTTGAAGACAAGTTGAAGA

       5322 ATTATTTCCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27


Consensus pattern (19 bp):   
TTTGAAGACAAGTTGAAGA
Done.