Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001737.1 Corchorus olitorius cultivar O-4 contig01737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32


Found at i:645 original size:12 final size:12

Alignment explanation


    Indices: 623--658  Score: 54
    Period size: 12  Copynumber: 2.9  Consensus size: 12

        613 AGGAGGAGAA

                         
        623 GAAGAAGAAAAAG
          1 GAAGAA-AAAAAG

                        
        636 GAAGAAAAAAAG
          1 GAAGAAAAAAAG

            *          
        648 AAAGAAAAAAA
          1 GAAGAAAAAAA

        659 AAGAGAGTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  12   16  0.73
  13    6  0.27

ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00


Consensus pattern (12 bp):   
GAAGAAAAAAAG

Found at i:855 original size:14 final size:14

Alignment explanation


    Indices: 811--854  Score: 61
    Period size: 14  Copynumber: 3.0  Consensus size: 14

        801 TTGAAATAAG

                           
        811 AGGGGAAAAAGGAAA
          1 AGGGG-AAAAGGAAA

             *            
        826 AAGGGAAAAGGAAA
          1 AGGGGAAAAGGAAA

                           
        840 AGGGGAAATAGGAAA
          1 AGGGGAAA-AGGAAA

        855 GTAATAATAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  14   16  0.62
  15   10  0.38

ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02


Consensus pattern (14 bp):   
AGGGGAAAAGGAAA
Done.