Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017373.1 Corchorus olitorius cultivar O-4 contig17406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32465
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Found at i:3927 original size:10 final size:10
Alignment explanation
Indices: 3912--3945 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
3902 AAGTTTAAAA
*
3912 AAAAAAAAGG
1 AAAAAAGAGG
3922 AAAAAAGA-G
1 AAAAAAGAGG
3931 AAAAAAGAGG
1 AAAAAAGAGG
3941 AAAAA
1 AAAAA
3946 GAATAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAAAGAGG
Found at i:3936 original size:18 final size:17
Alignment explanation
Indices: 3908--3957 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
3898 CCTGAAGTTT
3908 AAAA-AAAAAAAAGGAA
1 AAAAGAAAAAAAAGGAA
3924 AAAAGAGAAAAAAGAGG-A
1 AAAAGA-AAAAAA-AGGAA
*
3942 AAAAGAATAAAAAGGA
1 AAAAGAAAAAAAAGGA
3958 GGGGTTCAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 7 0.24
17 6 0.21
18 13 0.45
19 3 0.10
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAGAAAAAAAAGGAA
Found at i:4896 original size:54 final size:54
Alignment explanation
Indices: 4814--4968 Score: 274
Period size: 54 Copynumber: 2.9 Consensus size: 54
4804 GAAACAGGTG
4814 TTCAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGAGTTGATC
1 TTCAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGAGTTGATC
* *
4868 TTCAGATGATCTAGTGCGGTCATGCCAAGAAGTTTTCAATGGTCAGAGTTGATC
1 TTCAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGAGTTGATC
* *
4922 CTGAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGA
1 TTCAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGA
4969 TCATTCCAAG
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (54 bp):
TTCAGATGATCCAGTGCGGTCATTCCAAGAAGTTTTCAATGGTCAGAGTTGATC
Found at i:4973 original size:28 final size:28
Alignment explanation
Indices: 4941--4996 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
4931 TCCAGTGCGG
4941 TCATTCCAAGAAGTTTTCAATGGTCAGA
1 TCATTCCAAGAAGTTTTCAATGGTCAGA
4969 TCATTCCAAGAAGTTTTCAATGGTCAGA
1 TCATTCCAAGAAGTTTTCAATGGTCAGA
4997 GTTGATCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (28 bp):
TCATTCCAAGAAGTTTTCAATGGTCAGA
Found at i:5029 original size:82 final size:82
Alignment explanation
Indices: 4887--5050 Score: 283
Period size: 82 Copynumber: 2.0 Consensus size: 82
4877 TCTAGTGCGG
*
4887 TCATGCCAAGAAGTTTTCAATGGTCAGAGTTGATCCTGAGATGATCCAGTGCGGTCATTCCAAGA
1 TCATGCCAAGAAGTTTTCAATGGTCAGAGTTGATCCTCAGATGATCCAGTGCGGTCATTCCAAGA
*
4952 AGTTTTCAATGGTCAGA
66 AGTTTTCAATGATCAGA
* *
4969 TCATTCCAAGAAGTTTTCAATGGTCAGAGTTGATCTTCAGATGATCCAGTGCGGTCATTCCAAGA
1 TCATGCCAAGAAGTTTTCAATGGTCAGAGTTGATCCTCAGATGATCCAGTGCGGTCATTCCAAGA
*
5034 AGTTTTCGATGATCAGA
66 AGTTTTCAATGATCAGA
5051 GTTGATCTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (82 bp):
TCATGCCAAGAAGTTTTCAATGGTCAGAGTTGATCCTCAGATGATCCAGTGCGGTCATTCCAAGA
AGTTTTCAATGATCAGA
Found at i:5379 original size:35 final size:35
Alignment explanation
Indices: 5023--5378 Score: 437
Period size: 35 Copynumber: 10.0 Consensus size: 35
5013 TCCAGTGCGG
*
5023 TCATTCCAAGAAGTTTTCGATGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
** *
5058 TTGTTTCAAGAAGTTTTTGATGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
*
5093 TCATTTCAAGAAGTTTTCGGTGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
* * **
5128 TCCTTTCAGGAAGTTTTTTATGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
* * *
5163 TCATTTTCAAGATGTTTT-TATGGTCAGAGTTGATC
1 TCA-TTTCAAGAAGTTTTCGATGATCAGAGTTGATC
5198 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
* * *
5233 TCGTTTCAA-AGAGTTTTCGTTGATCATAGTTGATC
1 TCATTTCAAGA-AGTTTTCGATGATCAGAGTTGATC
** *
5268 TCATTTCAAGAAGTTTTTTATATGGTCAGAGTTGATC
1 TCATTTCAAGAAG--TTTTCGATGATCAGAGTTGATC
* **
5305 TCCTTTCAAGAAGTTTTTTTTTATGATCAGAGTTGATC
1 TCATTTCAAGAAG---TTTTCGATGATCAGAGTTGATC
*
5343 TTATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
1 TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
5378 T
1 T
5379 TCACATTGAT
Statistics
Matches: 278, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
34 14 0.05
35 189 0.68
36 13 0.05
37 29 0.10
38 33 0.12
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.42
Consensus pattern (35 bp):
TCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
Found at i:6105 original size:2 final size:2
Alignment explanation
Indices: 6062--6092 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6052 TTTTTGTTCT
*
6062 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6093 TCTTTCCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7037 original size:23 final size:22
Alignment explanation
Indices: 7006--7085 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 22
6996 GACCAAAAAG
7006 TTTTT-TTTATTAATTTAACTA
1 TTTTTATTTATTAATTTAACTA
* * *
7027 TATTTTATTTATTTACTGTTTA-TC
1 T-TTTTATTTA-TTAAT-TTAACTA
7051 TTTTTATTTATTAATTTAACTA
1 TTTTTATTTATTAATTTAACTA
*
7073 TTATCTATTTATT
1 TT-TTTATTTATT
7086 TACTATTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
21 4 0.09
22 11 0.24
23 22 0.48
24 6 0.13
25 3 0.07
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.66
Consensus pattern (22 bp):
TTTTTATTTATTAATTTAACTA
Found at i:7072 original size:46 final size:46
Alignment explanation
Indices: 7006--7134 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 46
6996 GACCAAAAAG
* *
7006 TTTTT-TTTATTAATTTAACTA-TATTTTATTTATTTACTGTTTATC
1 TTTTTATTTATTAATTTAACTATTA-TCTATTTATTTACTATTTATC
7051 TTTTTATTTATTAATTTAACTATTATCTATTTATTTACTATTTATC
1 TTTTTATTTATTAATTTAACTATTATCTATTTATTTACTATTTATC
* * *
7097 ---TT-TTTATTAATTTAGCTATTATCCATTTATTTATTATT
1 TTTTTATTTATTAATTTAACTATTATCTATTTATTTACTATT
7135 ATCCCTTTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
42 33 0.43
43 2 0.03
45 5 0.06
46 35 0.45
47 2 0.03
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (46 bp):
TTTTTATTTATTAATTTAACTATTATCTATTTATTTACTATTTATC
Found at i:7076 original size:19 final size:18
Alignment explanation
Indices: 7054--7137 Score: 60
Period size: 19 Copynumber: 4.3 Consensus size: 18
7044 GTTTATCTTT
*
7054 TTATTTATTAATTTAACTA
1 TTATCTATTAATTT-ACTA
*
7073 TTATCTATTTATTTACTA
1 TTATCTATTAATTTACTA
7091 TTTATCTTTTTATTAATTTAGCTA
1 -TTATC----TATTAATTTA-CTA
* * *
7115 TTATCCATTTATTTATTA
1 TTATCTATTAATTTACTA
7133 TTATC
1 TTATC
7138 CCTTTTTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
18 11 0.21
19 25 0.47
23 14 0.26
24 3 0.06
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.61
Consensus pattern (18 bp):
TTATCTATTAATTTACTA
Found at i:7082 original size:42 final size:39
Alignment explanation
Indices: 7006--7130 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 39
6996 GACCAAAAAG
*
7006 TTTTTTTTATTAATTTAACTA-TATTTTATTTATTTACTGTTTAT
1 TTTTTTTTATTAATTTAACTATTA-TCTATTTATTTA-----TAT
7050 CTTTTTATTTATTAATTTAACTATTATCTATTTATTTACTAT
1 -TTTTT-TTTATTAATTTAACTATTATCTATTTATTTA-TAT
* *
7092 TTATCTTTTTATTAATTTAGCTATTATCCATTTATTTAT
1 TT-T-TTTTTATTAATTTAACTATTATCTATTTATTTAT
7131 TATTATCCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
41 3 0.04
42 33 0.46
43 2 0.03
45 5 0.07
46 27 0.38
47 2 0.03
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (39 bp):
TTTTTTTTATTAATTTAACTATTATCTATTTATTTATAT
Found at i:7103 original size:27 final size:26
Alignment explanation
Indices: 7036--7103 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
7026 ATATTTTATT
* * *
7036 TATTTACTGTTTATCTTTTTATTTAT
1 TATTTACTTTTTATCTATTTATTTAC
*
7062 TAATTTAAC-TATTATCTATTTATTTAC
1 T-ATTT-ACTTTTTATCTATTTATTTAC
7089 TATTTATCTTTTTAT
1 TATTTA-CTTTTTAT
7104 TAATTTAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.03
26 6 0.18
27 24 0.73
28 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.65
Consensus pattern (26 bp):
TATTTACTTTTTATCTATTTATTTAC
Found at i:7203 original size:24 final size:24
Alignment explanation
Indices: 7149--7208 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
7139 CTTTTTTACT
* *
7149 TACCTATTTATCTATTATTCTCTG
1 TACCTATTTATCAATTATTCTCTA
*
7173 TATCTATTTATCAATT-TATCTCTA
1 TACCTATTTATCAATTAT-TCTCTA
*
7197 TACCTATATATC
1 TACCTATTTATC
7209 TTTTTATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.27, C:0.20, G:0.02, T:0.52
Consensus pattern (24 bp):
TACCTATTTATCAATTATTCTCTA
Found at i:9383 original size:20 final size:20
Alignment explanation
Indices: 9360--9398 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9350 AAATTAGTTA
9360 TAAAAAAACCTAATTAAATC
1 TAAAAAAACCTAATTAAATC
* **
9380 TAAATAAGTCTAATTAAAT
1 TAAAAAAACCTAATTAAAT
9399 TTTAAATAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAAAAAACCTAATTAAATC
Found at i:10106 original size:28 final size:28
Alignment explanation
Indices: 10066--10121 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
10056 CAACATTCTT
10066 CATCAAGATCTGTAAGGTATGGGCGTAG
1 CATCAAGATCTGTAAGGTATGGGCGTAG
*
10094 CATCAAGATCTGTAAGGTATGGGTGTAG
1 CATCAAGATCTGTAAGGTATGGGCGTAG
10122 AGTTGGATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.27
Consensus pattern (28 bp):
CATCAAGATCTGTAAGGTATGGGCGTAG
Found at i:20237 original size:15 final size:15
Alignment explanation
Indices: 20219--20257 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
20209 AATTGAATAC
*
20219 GAGAAAATCAAATCT
1 GAGACAATCAAATCT
20234 GAGACAATCAAATCT
1 GAGACAATCAAATCT
20249 GAGACAATC
1 GAGACAATC
20258 GAAGAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.49, C:0.18, G:0.15, T:0.18
Consensus pattern (15 bp):
GAGACAATCAAATCT
Found at i:20697 original size:19 final size:19
Alignment explanation
Indices: 20675--20715 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
20665 TTTATTTAGG
20675 TTTTAATTTCCTAGTGGTA
1 TTTTAATTTCCTAGTGGTA
20694 TTTTAATTTCCTAGTGGTA
1 TTTTAATTTCCTAGTGGTA
20713 TTT
1 TTT
20716 CCTAATGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.15, T:0.56
Consensus pattern (19 bp):
TTTTAATTTCCTAGTGGTA
Found at i:27755 original size:14 final size:14
Alignment explanation
Indices: 27736--27764 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27726 AATTGCTATT
27736 CACCCCCCCCCCCC
1 CACCCCCCCCCCCC
27750 CACCCCCCCCCCCC
1 CACCCCCCCCCCCC
27764 C
1 C
27765 TCCTAGCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.93, G:0.00, T:0.00
Consensus pattern (14 bp):
CACCCCCCCCCCCC
Found at i:27757 original size:13 final size:13
Alignment explanation
Indices: 27739--27763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27729 TGCTATTCAC
27739 CCCCCCCCCCCCA
1 CCCCCCCCCCCCA
27752 CCCCCCCCCCCC
1 CCCCCCCCCCCC
27764 CTCCTAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.96, G:0.00, T:0.00
Consensus pattern (13 bp):
CCCCCCCCCCCCA
Found at i:30976 original size:2 final size:2
Alignment explanation
Indices: 30969--30997 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
30959 TAAACTTAAG
30969 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30998 GAGGATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32080 original size:75 final size:71
Alignment explanation
Indices: 31992--32334 Score: 274
Period size: 72 Copynumber: 4.6 Consensus size: 71
31982 ATCTCCTCCA
* * * * * *
31992 CCTCCACCTCCTAAGAAACCATACAAGTATAAATCTCCACCACCACCACCTCCAGTCTACAAATA
1 CCTCCACCTCCTAAGGAACCATACAAGTACAAGTCTCCTCC-CCTCCACCTCCAGTTTACAAATA
*
32057 CAAGTCC
65 CAAATCC
*
32064 CCTCCACCACCTCCTAAGGAGCCATACAAGTACAAGTCTCCTCCTCCTCCACC-CCTAGTTTACA
1 CCT---CCACCTCCTAAGGAACCATACAAGTACAAGTCTCCTCC-CCTCCACCTCC-AGTTTACA
*
32128 AGTACAAATCC
61 AATACAAATCC
* * *
32139 CCTCCTCCTCCTAAGGAACCATACAAGTACAAGTCTCCTCCCCTCCACCTCCAGTTTACAAGTAT
1 CCTCCACCTCCTAAGGAACCATACAAGTACAAGTCTCCTCCCCTCCACCTCCAGTTTACAAATAC
32204 AAATCTCC
66 AAA--TCC
* **** * * * * *
32212 ACCACCACCAGTGCATTCTCCCCCACCCCCATACAAGTACAAGTCTCCCCCACCACCACCCCCCG
1 -CCTCCACC--T-C---CT-AAGGA--ACCATACAAGTACAAGTCTCCTCC-CCTCCACCTCCAG
* *
32277 TTTACAAGTACAAGTCC
55 TTTACAAATACAAATCC
* *
32294 CCTCCTCCTCCTAAGGAACCATACAAGTACAAGTCCCCTCC
1 CCTCCACCTCCTAAGGAACCATACAAGTACAAGTCTCCTCC
32335 TCCCCCACTC
Statistics
Matches: 218, Mismatches: 35, Indels: 36
0.75 0.12 0.12
Matches are distributed among these distances:
71 23 0.11
72 62 0.28
73 3 0.01
74 9 0.04
75 61 0.28
76 1 0.00
77 1 0.00
78 1 0.00
79 1 0.00
80 2 0.01
81 7 0.03
82 3 0.01
83 22 0.10
84 22 0.10
ACGTcount: A:0.29, C:0.43, G:0.08, T:0.20
Consensus pattern (71 bp):
CCTCCACCTCCTAAGGAACCATACAAGTACAAGTCTCCTCCCCTCCACCTCCAGTTTACAAATAC
AAATCC
Found at i:32128 original size:36 final size:35
Alignment explanation
Indices: 32088--32211 Score: 115
Period size: 36 Copynumber: 3.5 Consensus size: 35
32078 TAAGGAGCCA
*
32088 TACAAGTACAAGTCTCCTCCTCCTCCACCCCTAGTT
1 TACAAGTACAAATCTCCTCCTCCTCCACCCC-AGTT
* **** ***
32124 TACAAGTACAAATCCCCTCCTCCTCCTAAGGAACCA
1 TACAAGTACAAATCTCCTCCTCCTCC-ACCCCAGTT
*
32160 TACAAGTACAAGTCTCCTCC-CCTCCACCTCCAGTT
1 TACAAGTACAAATCTCCTCCTCCTCCACC-CCAGTT
*
32195 TACAAGTATAAATCTCC
1 TACAAGTACAAATCTCC
32212 ACCACCACCA
Statistics
Matches: 66, Mismatches: 20, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
34 1 0.02
35 21 0.32
36 43 0.65
37 1 0.02
ACGTcount: A:0.28, C:0.39, G:0.08, T:0.25
Consensus pattern (35 bp):
TACAAGTACAAATCTCCTCCTCCTCCACCCCAGTT
Found at i:32271 original size:155 final size:148
Alignment explanation
Indices: 32085--32454 Score: 497
Period size: 155 Copynumber: 2.4 Consensus size: 148
32075 TCCTAAGGAG
* * * *
32085 CCATACAAGTACAAGTCTCCTCCTCCTCCACCCCTAGTTTACAAGTACAAATCCCCTCCTCCTCC
1 CCATACAAGTACAAGTCTCCACCACCACCACCCCT-GTTTACAAGTACAAGTCCCCTCCTCCTCC
* *
32150 TAAGGAACCATACAAGTACAAGTCTCCTCCCCTCCACCTCCAGTTTACAAGTATAAATCTCCACC
65 TAAGGAACCATACAAGTACAAGTC-CC-CCCCT-C-CC-CCACTCTACAAGTATAAATCTCCACC
***
32215 ACCACCAGTGCATTCTCCCCCACCC
125 ACCACCAACACATTCT-CCCCACCC
* *
32240 CCATACAAGTACAAGTCTCCCCCACCACCACCCCCCGTTTACAAGTACAAGTCCCCTCCTCCTCC
1 CCATACAAGTACAAGTCTCCACCACCACCA-CCCCTGTTTACAAGTACAAGTCCCCTCCTCCTCC
* *
32305 TAAGGAACCATACAAGTACAAGTCCCCTCCTCCCCCACTCTACAAGTATAAGTCTCCACCACCAC
65 TAAGGAACCATACAAGTACAAGTCCCCCCCTCCCCCACTCTACAAGTATAAATCTCCACCACCAC
*
32370 CAACACATTCTCCCCACCT
130 CAACACATTCTCCCCACCC
* * * *
32389 CCTTACAAATACAAGTCTCCACCACCACCACCCCCTGTTTACAAATACAAGTCTCCTCCTCCTCC
1 CCATACAAGTACAAGTCTCCACCACCACCA-CCCCTGTTTACAAGTACAAGTCCCCTCCTCCTCC
32454 T
65 T
32455 CCCAAGGAGC
Statistics
Matches: 195, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
149 67 0.34
150 36 0.18
151 2 0.01
152 1 0.01
153 4 0.02
154 2 0.01
155 79 0.41
156 4 0.02
ACGTcount: A:0.28, C:0.44, G:0.07, T:0.21
Consensus pattern (148 bp):
CCATACAAGTACAAGTCTCCACCACCACCACCCCTGTTTACAAGTACAAGTCCCCTCCTCCTCCT
AAGGAACCATACAAGTACAAGTCCCCCCCTCCCCCACTCTACAAGTATAAATCTCCACCACCACC
AACACATTCTCCCCACCC
Done.