Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017374.1 Corchorus olitorius cultivar O-4 contig17407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83511

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44--177
30
4.1
30
66
20
88
26
41
9
21
1.84
17--183
36
4.8
36
69
14
125
28
43
8
19
1.80
4426--4484
29
2.1
29
90
3
93
27
27
15
30
1.96
5886--5925
21
2.0
20
85
5
53
17
37
17
27
1.92
7122--7189
34
2.1
32
84
10
86
35
13
10
41
1.78
7567--7599
17
1.9
17
100
0
66
36
15
0
48
1.45
7852--7919
16
4.3
16
79
3
84
52
29
10
7
1.62
8609--8740
66
2.0
66
98
0
255
43
13
15
27
1.85
9335--9446
57
2.0
57
94
0
197
42
9
7
40
1.65
11383--11429
2
23.5
2
95
0
85
51
2
0
46
1.13
11490--11545
22
2.6
21
75
8
51
46
14
5
33
1.67
11749--11898
22
6.9
22
73
11
103
35
17
10
37
1.83
11987--12029
22
2.0
22
95
0
77
32
20
11
34
1.89
12211--12261
22
2.3
22
86
0
66
37
13
11
37
1.82
12880--12961
20
4.0
21
74
7
60
32
21
12
32
1.91
12820--12998
22
8.4
22
69
14
81
32
17
9
40
1.82
19834--19885
27
2.0
26
84
3
68
38
0
5
55
1.24
19844--19896
20
2.5
20
84
9
70
39
0
3
56
1.17
20199--20240
15
2.9
15
89
3
59
59
0
4
35
1.19
20199--20240
14
2.9
15
89
3
59
59
0
4
35
1.19
23272--23368
45
2.2
45
88
1
142
36
6
21
36
1.79
26013--26054
21
2.0
21
95
0
75
35
28
16
19
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32290--32335
22
2.0
23
87
4
67
26
28
26
19
1.99
33257--33298
21
2.0
21
95
0
75
35
28
16
19
1.93
41792--41860
2
33.0
2
80
8
66
46
2
5
44
1.42
41801--41871
36
2.0
35
94
2
124
45
1
9
43
1.46
43273--43309
16
2.2
17
86
13
51
75
2
16
5
1.10
45358--45461
51
2.0
51
96
0
190
39
8
10
41
1.70
46055--46186
66
2.0
66
95
0
237
27
15
12
44
1.82
46225--46249
12
2.1
12
100
0
50
24
24
16
36
1.94
47732--47949
109
2.0
109
94
0
382
31
11
13
43
1.79
48299--48392
45
2.2
43
88
7
138
39
22
4
34
1.74
55516--55579
31
2.1
31
93
0
110
48
6
23
21
1.73
56419--56466
23
2.1
23
88
0
69
12
25
16
45
1.82
70841--71113
144
1.9
144
80
1
323
30
20
18
31
1.96
76432--76486
26
2.1
26
82
0
65
29
23
12
34
1.92
78419--78465
26
1.9
23
87
12
67
40
4
27
27
1.75
80168--80353
67
2.8
65
84
5
250
16
18
14
50
1.79
83384--83420
19
2.0
19
89
5
58
32
2
0
64
1.07

Tables:   1

The End!