Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017375.1 Corchorus olitorius cultivar O-4 contig17408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44493

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2749--3034
141
2.0
140
94
2
502
37
18
13
31
1.89
6412--6449
20
1.9
20
88
0
58
71
0
21
7
1.11
11983--12021
2
19.5
2
94
0
69
53
0
46
0
1.00
15372--15456
34
2.5
34
100
0
170
21
18
15
44
1.86
18083--18504
39
10.8
39
80
6
349
18
23
26
31
1.98
31679--31722
21
2.0
22
91
4
72
40
6
11
40
1.68
31874--31957
41
2.0
41
83
2
105
17
28
11
41
1.85
35467--35691
77
2.9
76
89
0
333
18
26
34
20
1.96
35467--35708
76
3.2
76
89
0
349
17
25
36
19
1.94
42897--42950
29
2.0
28
82
10
67
46
5
3
44
1.44
43362--43650
145
2.0
145
97
0
551
47
5
6
41
1.52

Tables:   1

The End!