Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017376.1 Corchorus olitorius cultivar O-4 contig17409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48304

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1277--1337
24
2.5
24
97
0
113
13
1
24
60
1.42
1436--1465
13
2.3
13
94
0
51
16
0
30
53
1.44
4075--4175
51
2.0
50
98
1
193
47
9
7
34
1.66
4295--4343
21
2.3
21
92
0
80
46
26
12
14
1.79
6274--6308
15
2.4
14
95
4
61
37
0
20
42
1.52
7395--7456
29
2.2
29
82
5
74
37
4
3
54
1.38
22091--22141
7
7.3
7
97
0
93
47
0
27
25
1.53
22094--22153
14
4.3
14
91
6
86
46
0
28
25
1.53
28494--28527
11
3.0
11
91
8
59
0
17
0
82
0.67
28494--28527
6
5.8
6
93
6
61
0
17
0
82
0.67
38796--38860
31
2.1
31
94
0
112
44
15
18
21
1.86
38806--38875
31
2.3
31
92
0
113
38
17
12
31
1.87
39496--39735
127
1.9
125
85
6
333
35
10
1
52
1.45
39882--39964
31
2.7
31
96
0
148
33
14
10
40
1.81
43230--43433
105
2.0
102
91
4
329
33
12
2
50
1.53
43386--43429
23
1.9
23
81
9
54
25
13
0
61
1.32
46691--46756
33
2.0
33
100
0
132
24
21
18
36
1.95

Tables:   1

The End!