Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017377.1 Corchorus olitorius cultivar O-4 contig17410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49288

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4618--4654
17
2.1
18
90
5
58
48
5
2
43
1.40
7050--7120
29
2.4
30
85
2
99
32
9
23
33
1.88
11290--11458
31
5.5
31
83
8
220
33
20
20
26
1.97
11290--11460
60
2.8
63
88
5
235
33
20
20
25
1.97
11530--11630
29
3.4
29
72
10
96
25
18
18
36
1.94
11500--11662
60
2.7
60
92
2
265
24
19
19
37
1.94
11992--12035
3
14.7
3
100
0
88
68
0
0
31
0.90
11990--12085
15
6.6
14
79
12
61
61
1
2
35
1.15
12053--12085
14
2.3
15
89
5
50
51
3
0
45
1.16
32579--32609
16
1.9
16
93
0
53
6
32
0
61
1.21
35124--35157
2
17.0
2
100
0
68
50
0
0
50
1.00
38896--38940
18
2.4
19
88
3
65
42
0
2
55
1.12
42559--42592
11
3.2
11
91
4
52
32
0
14
52
1.42
42728--42763
14
2.6
14
100
0
72
5
36
0
58
1.22

Tables:   1

The End!