Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017383.1 Corchorus olitorius cultivar O-4 contig17416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20624

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
559--678
60
2.0
60
91
3
197
44
12
14
29
1.81
878--1010
29
4.7
28
78
5
115
39
21
15
23
1.92
878--1010
58
2.3
56
81
5
149
39
21
15
23
1.92
906--1042
58
2.4
58
83
4
170
36
24
16
23
1.94
3318--3369
25
2.1
25
100
0
104
44
11
11
32
1.77
3467--3603
29
4.8
29
90
2
208
43
24
13
17
1.86
4092--4397
30
9.7
30
78
8
247
45
17
15
20
1.85
4499--5237
172
4.3
171
89
2
1060
34
16
21
27
1.95
6925--7055
8
16.5
8
89
8
198
13
0
11
74
1.06
7445--7483
8
5.0
8
84
6
53
7
17
0
74
1.05
7445--7478
15
2.3
15
100
0
68
5
17
0
76
0.98
7465--7505
12
3.4
12
81
18
50
12
19
0
68
1.21
7474--7520
16
3.3
14
85
11
60
14
12
0
72
1.13

Tables:   1

The End!