Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017386.1 Corchorus olitorius cultivar O-4 contig17419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55711

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
263--306
2
22.5
2
81
4
54
50
0
6
43
1.29
263--306
12
3.6
12
87
3
61
50
0
6
43
1.29
8605--8764
30
5.3
30
86
5
225
33
38
18
10
1.85
9218--9307
33
2.7
33
87
0
117
37
6
20
35
1.79
9355--9660
153
2.0
153
99
0
603
30
14
14
40
1.86
10502--10564
24
2.6
25
82
12
78
4
15
1
77
1.01
12485--12636
76
2.0
76
80
5
173
18
28
28
25
1.98
13672--13697
3
8.7
3
100
0
52
30
0
0
69
0.89
17326--17378
27
2.0
27
92
0
88
79
3
11
5
1.03
17329--17381
6
8.3
6
84
12
61
79
1
13
5
0.99
20540--20593
23
2.3
23
83
0
63
38
11
29
20
1.87
22474--22508
13
2.7
13
95
0
61
28
22
31
17
1.96
23076--23144
20
3.5
20
68
20
56
53
21
10
14
1.70
23088--23143
19
2.9
19
76
12
60
53
21
8
16
1.69
26201--26276
29
2.7
28
80
8
84
39
25
14
21
1.91
28025--28079
26
2.1
26
96
0
101
47
0
18
34
1.49
42077--42139
29
2.2
29
100
0
126
9
20
6
63
1.46
42085--42141
17
3.7
17
71
23
63
10
17
8
63
1.51
44761--44821
26
2.4
25
78
7
61
8
21
19
50
1.73
45527--45900
67
5.6
67
81
6
372
24
19
15
40
1.90
45585--45951
67
5.5
63
76
13
199
24
20
14
40
1.89
50998--51033
19
1.9
18
88
5
54
41
2
19
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54332--54373
22
1.9
22
85
0
57
19
7
7
66
1.39

Tables:   1

The End!