Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017397.1 Corchorus olitorius cultivar O-4 contig17430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5999
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:4233 original size:21 final size:21

Alignment explanation


    Indices: 4181--4234  Score: 58
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       4171 GGGATTGGAG

                           *  *  
       4181 TATTTA-TTTATTTTGTTTCT
          1 TATTTATTTTATTTTCTTGCT

                    *             
       4201 TAATTT-TATTATTTTCTTGCT
          1 T-ATTTATTTTATTTTCTTGCT

                         
       4222 TATTTATTTTATT
          1 TATTTATTTTATT

       4235 GTTACTCTTT


Statistics
Matches: 27,  Mismatches: 4, Indels: 5
        0.75            0.11        0.14

Matches are distributed among these distances:
  20    5  0.19
  21   22  0.81

ACGTcount: A:0.19, C:0.06, G:0.04, T:0.72


Consensus pattern (21 bp):   
TATTTATTTTATTTTCTTGCT
Done.