Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001740.1 Corchorus olitorius cultivar O-4 contig01740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:56 original size:39 final size:39

Alignment explanation


    Indices: 2--117  Score: 169
    Period size: 39  Copynumber: 3.0  Consensus size: 39

          1 C

                                            *      
          2 AAAGCAATAATCCTAAATCAGGATTGGTATAAGACTGAT
          1 AAAGCAATAATCCTAAATCAGGATTGGTATAAAACTGAT

                 *           *                     
         41 AAAGCGATAATCCTAAACCAGGATTGGTATAAAACTGAT
          1 AAAGCAATAATCCTAAATCAGGATTGGTATAAAACTGAT

              *            *          **          
         80 AAGGCAATAATCCTAGATCAGGATTGAAATAAAACTGA
          1 AAAGCAATAATCCTAAATCAGGATTGGTATAAAACTGA

        118 CAACACAATA


Statistics
Matches: 68,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  39   68  1.00

ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23


Consensus pattern (39 bp):   
AAAGCAATAATCCTAAATCAGGATTGGTATAAAACTGAT

Done.