Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017400.1 Corchorus olitorius cultivar O-4 contig17433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7661
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32


Found at i:358 original size:2 final size:2

Alignment explanation


    Indices: 351--386  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        341 ATTTTAGGTG

                                                                   
        351 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        387 CGTTAACGCT


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.97

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.