Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017401.1 Corchorus olitorius cultivar O-4 contig17434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2203
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:744 original size:15 final size:15

Alignment explanation


    Indices: 721--755  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        711 GTGGAATAGT

                *          
        721 CAATCCAAAAACAAA
          1 CAATTCAAAAACAAA

                           
        736 CAATTCAAAAACAAA
          1 CAATTCAAAAACAAA

                 
        751 CAATT
          1 CAATT

        756 TTCTATCCTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14


Consensus pattern (15 bp):   
CAATTCAAAAACAAA

Found at i:1498 original size:21 final size:21

Alignment explanation


    Indices: 1472--1515  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1462 CTGCTTGGCG

                    *             
       1472 CGCGGGCTGGCCTGGC-GATGT
          1 CGCGGGCTAGCCT-GCTGATGT

                                 
       1493 CGCGGGCTAGCCTGCTGATGT
          1 CGCGGGCTAGCCTGCTGATGT

              
       1514 CG
          1 CG

       1516 ATGCTTGTCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20    2  0.10
  21   19  0.90

ACGTcount: A:0.07, C:0.30, G:0.43, T:0.20


Consensus pattern (21 bp):   
CGCGGGCTAGCCTGCTGATGT
Done.